Projects (101)

Name PI Domain of Life # Samples Reads Metadata Assemblies Peptides
Acid Mine Drainage Metagenome Jillian F Banfield bacteria 2  
Microbial community gene expression across a productivity gradient ... Jonathan P Zehr, E Virginia Armbrust bacteria 40    
Antarctica Aquatic Microbial Metagenome Jeff Hoffman bacteria 162    
Host-microbe interactions in an Atriplex microbiome Mary Lucero bacteria 28    
Metagenomic Analysis of the North Atlantic Spring Bloom Stephen J Giovannoni bacteria 14    
Marine Bacterioplankton Metagenomes David Karl bacteria 8    
Metagenome from Yellowstone Bison Hot Spring Everett Shock bacteria 4    
Botany Bay Metagenomes Torsten Thomas bacteria 27    
Polyamine Metatranscriptomic Study Mary Ann Moran bacteria 6    
Diverse syntrophic partnerships by direct cell capture and metageno... Victoria J Orphan bacteria 2    
Chicken Cecum Microbiome Bryan A White bacteria 2    
Metagenomic analysis of stressed coral holobionts Forest Rohwer bacteria 13    
Dauphin Island Cubitainer Experiment (DICE) Mary Ann Moran bacteria 6    
Comparative day/night metatranscriptomic analysis of microbial comm... Mary Ann Moran bacteria 2    
Mediterranean Bathypelagic Habitat Metagenome Francisco Rodriguez-Valera bacteria 1    
Phosphorus Removing (EBPR) Sludge Community Philip Hugenholtz bacteria 2    
Epibiont Metagenome Stephen C Cary bacteria 1    
Waseca County Farm Soil Metagenome Edward M Rubin bacteria 1  
Global Ocean Sampling Expedition (GOS) J Craig Venter bacteria, viruses, eukarya, archaea 83  
Surface Water Marine Microbial Community Gene Expression Jonathan P Zehr bacteria 16    
Mediterranean Gutless Worm Metagenome Edward M Rubin bacteria 1  
Human Microbiome Project NIH Roadmap for Medical Research bacteria 4    
Microbial Community Genomics at the HOT/ALOHA David Karl, Edward F. DeLong bacteria 25    
Human Distal Gut Biome project Steven R Gill bacteria 3    
13 Healthy Human Gut Metagenomes Tetsuya Hayashi, Masahira Hattori bacteria 13    
Metagenomic Diagnosis of Bacterial Infections Tetsuya Iida bacteria 2    
Hydrothermal Vent Metagenome John A Baross bacteria 1    
Metagenome isolated from Guerrero Negro hypersaline microbial mat i... Philip Hugenholtz bacteria 10    
Ice Metagenome of the Northern Schneeferner Rolf Daniel bacteria 1    
Marine Metagenome from Line Islands Elizabeth A Dinsdale bacteria 8    
Metagenome of Marine NaCl-Saturated Brine Francisco Rodriguez-Valera bacteria 1    
Moore Marine Microbial Sequencing NA bacteria, archaea 182    
Microbial Oceanography Course Stephen J Giovannoni, John F Heidelberg, Craig E Nelson, Craig Carlson bacteria 173    
Microbial metagenome from Rios Mesquites microbiolite Mya Breitbart bacteria 2    
Monterey Bay Microbial Study Edward F. DeLong bacteria 6    
Mouse Gut Community Jeffrey Gordon bacteria 5    
Mouse Skin Metagenome Julia A Segre bacteria 1    
Pacific Beach Sand Metagenome Baylor College of Medicine bacteria 1    
Marine Metagenome from Coastal Waters project at Plymouth Marine La... Jack Gilbert bacteria 8    
Influence of nitrogen-fixation on microbial community gene expressi... Jonathan P Zehr, Mary Ann Moran bacteria 28    
Metagenomic signatures of the Peru Margin Jennifer Biddle bacteria 5    
Singapore Air Metagenome Edward M Rubin bacteria 2    
AAP gene operon study of SAR11 clades Stephen J Giovannoni bacteria 4    
Viral and Microbial Metagenomes from Salterns of Differing Salinities Forest Rohwer bacteria, viruses 32    
Sapelo Island Summer 2008 Bacterioplankton Metatranscriptome Mary Ann Moran bacteria 2    
Sapelo Island Bacterioplankton Metagenome Mary Ann Moran bacteria 8    
Sargasso Sea Bacterioplankton Community Mary Ann Moran bacteria 2    
Marine Synechococcus metagenome experiment Brian Palenik bacteria 1    
Synechococcus Study Jennifer B H Martiny bacteria 2    
Termite Gut Metagenome California Institute of Technology bacteria 1    
A core gut microbiome in obese and lean twins Jeffrey Gordon bacteria 20    
Washington Lake Metagenomes Ludmila Chistoserdova bacteria 5    
Diversity and population structure of sewage-derived microorganisms... Sandra L McLellan bacteria 9    
Wastewater Metagenome Mallard Creek Anthony A Fodor bacteria 5    
Western Channel Observatory Microbial Metagenomic Study Jack Gilbert bacteria 30    
Whale Fall Metagenome Edward M Rubin bacteria 3  
Yellowstone Lake: Genetic and Gene Diversity in a Freshwater Lake Shibu Yooseph, John Varley, William P Inskeep, Timothy R McDermott, Jeffrey I Gordon bacteria 42    
Yellowstone National Park Octopus/Mushroom Hot Springs Metagenome Devaki Bhaya bacteria 6    
Metagenomic sequencing of terephthalate-degrading consortia from mo... University of Illinois bacteria 1    
Canine fecal metagenome Scot E Dowd bacteria 5    
Guaymas Basin deep-sea Metagenome Gregory Dick bacteria 8    
Microbial Initiative in Low Oxygen areas off Concepcion and Oregon Stephen J Giovannoni, Ricardo Letelier, Osvaldo Ulloa bacteria 64    
Bermuda Oceanic Microbial Observatory Course Craig E Nelson bacteria 2    
Bloomer DOM addition experiment Edward F. DeLong bacteria 7    
Monterey Bay transect CN207 sampling sites Alexandra Z Worden bacteria 12    
Bloomer DSW addition experiment Edward F. DeLong bacteria 13    
Solemya velum symbiont gill transcriptome Edward F. DeLong bacteria 1    
Two HOT Fosmid end depth profiles (HOT179 and HOT186) Thomas Danhorn, Edward F. DeLong bacteria 8    
Diel gene expression profiles of a phosphorus limited mountain lake... Mary Ann Moran, Maria Vila-Costa, Emilio O Casamayor bacteria 4    
Swine fecal viromes with and without in-feed antibiotics Thad Stanton bacteria 15    
Metatranscriptomics of contaminated soil Evelyn Doyle bacteria 1    
Sapelo Island Microbial Observatory (SIMO) metatranscriptomes pt I Mary Ann Moran bacteria 4      
Mleidyi_bacteria Lasse Riemann bacteria 1    
Community succession in DOC utilization experiment reflects functio... Lasse Riemann bacteria 1    
Bacterial Diversity in Soils under Artemisia sieberi and Noaea mucr... Yosef Steinberger bacteria 8    
BATS 16S rRNA pyrosequencing time- and depth-series Stephen J Giovannoni bacteria 7    
Symbiotic prokaryotic communities in sponges Michael P Lesser bacteria 57    
CMOP microbial metagenomics Andrew E Allen, Mariya Smit, Holly Simon, Lisa Z Allen bacteria 12      
Fluorescent epibiotic biofilm on Bahamaian ostracods Michael P Lesser, Charles Mazel, Cara L Fiore, Jessica K Jarett bacteria 1  
Lagrangian sampling of Monterey Bay Surface waters Christopher Scholin, Edward F. DeLong bacteria 13    
North Pacific metatranscriptomes from Monterey Bay to Open Ocean (C... Alexandra Z Worden bacteria 4    
Microbial controls on DMSP degradation and DMS formation in the Sar... Mary Ann Moran, Maria Vila-Costa bacteria 4    
Transcriptional Response of Bathypelagic Marine Bacteria to the Dee... Mary Ann Moran, Susannah Green Tringe, Samantha B Joye bacteria 21    
Sapelo Island Microbial Observatory (SIMO) metatranscriptomes II Mary Ann Moran bacteria 16    
Global Ocean Sampling Baltic Sea Shibu Yooseph, Craig Venter, Bergitta Bergman, Chistopher Dupont bacteria, viruses, eukarya, archaea 63    
RIVER AMAZON METAGENOME Francisco Rodriguez-Valera, Flavio Henrique-Silva bacteria 1    
Deep Chlorophyll Maximum Metagenome Francisco Rodriguez-Valera bacteria 1    
Santa Pola Saltern 19 Percent Francisco Rodriguez-Valera bacteria 1    
Santa Pola Saltern 37 percent Francisco Rodriguez-Valera bacteria, viruses, eukarya, archaea 1    
Freshwater Lagoon Albufera Francisco Rodriguez-Valera, Chistopher Dupont bacteria, viruses, eukarya, archaea 3    
Hypersaline_Lagoon_MarMenor Francisco Rodriguez-Valera, Chistopher Dupont bacteria, viruses, eukarya, archaea 3    
A biomolecular approach to the cycling of carbon and iron in the ocean Mary Ann Moran, Ingrid Obernosterer bacteria 13    
White pox in Acropora palmata Michael P Lesser, Jessica K Jarett bacteria 1    
Mahoney Lake Metagenome Ann Pearson bacteria 3  
Global Ocean Sampling Banyoles Emilio O Casamayor, Chistopher Dupont bacteria, viruses, eukarya, archaea 12    
Amazon Continuum Plume Cruise - May/June 2010 Mary Ann Moran, John H Paul, Patricia L Yager, Byron C Crump bacteria, viruses, eukarya, archaea 108        
Xmuta Metatranscriptome Michael P Lesser bacteria 3        
Southern California Bight microbial metagenomics Andrew Allen bacteria 48        
290 Metagenome-assembled Genomes from the Mediterranean Sea: Ongoin... John F. Heidelberg, Benjamin J. Tully, Rohan Sachdeva, Elaina D. Graham bacteria 6        
Bug Mixing E_coli/S_sapro/S_flex/MSSA/MRSA NA bacteria 28        
Staggered Mock Community NA bacteria 0