Project Name Intra-Species Genetic Diversity of the Centric Diatom Thalassiosira Pseudonana: Genome-Wide Comparisons via Massively Parallel Short-Read DNA Sequencing  
Domain (1) eukarya
Investigators (1)
Institution University of Washington
Project Code CAM_PROJ_IntraDiversity
Project Type eukaryotes
Publications (1)


An Applied Biosystems SOLiD Analyzer was used to re-sequence the genome of Thalassiosira pseudonana (CCMP1335), yielding over 6 gigabases covering the original reference genome to a depth exceeding 150x. Six additional strains of T. pseudonana from different ocean basins (including a recently isolated Mediterranean strain) were also sequenced to a similar depth of coverage. The genomes are currently be analyzed to identify gene arrangement and content, SNP distributions, distributions and frequency of non-synonymous to synonymous mutations across the seven genomes, and phylogenetic relatedness.


No assemblies.


Sample Name PI Desc Cart
CCMP1335 NA
CCMP1012 NA
CCMP1013 NA
CCMP1014 NA
CCMP1015 NA
CCMP1007 NA
RcTp NA