Project Name Western Channel Observatory Microbial Metagenomic Study 
Domain (1) bacteria
Investigators (1)
Institution Plymouth Marine Laboratory
Project Code CAM_PROJ_WesternChannelOMM
Project Type metagenome
Publications (1)


The Western Channel Observatory maintains more than 100 years of continual environmental monitoring, including oceanographic and biological measures. At PML we are committed to developing this outstanding time series to include the most up to date techniques available. Our aim is to provide an holistic ecologically relevant dataset that can be used to inform environmental models and help with prediction of the impact that climate change will have on the coastal seas of the United Kingdom. With further development and comparative studies this information can help to inform on global marine environments. To this end we have been employing the latest in high-throughput sequencing technology to investigate the microbial diversity and community function in this ecosystem. The technologies applied include 16S rDNA tag-pyrosequencing to deep sequence microbial diversity, as well as total community metagenomics and metatranscriptomics. This initial study includes 16S rDNA tag sequencing data for bacteria and archaeal groups as well as metagenomics and metatranscriptomics all performed on the GS-flx titanium platform using techniques outlined in Gilbert et al (2009 Environmental Microbiology) and Gilbert et al (2008 ? PloS One.) We will continue to add to this repository to maintain the temporal analysis of this community.


No assemblies.


Sample Name PI Desc Cart
WESTERNCHANNELOMM_SMPL_150-JAN_DAY NA Jan Day cDNA
WESTERNCHANNELOMM_SMPL_151-JAN_DAY_PREFILTER NA Jan Day prefilter cDNA
WESTERNCHANNELOMM_SMPL_152-JAN_NIGHT_PREFILTER NA Jan Night prefilter cDNA
WESTERNCHANNELOMM_SMPL_153-APR_DAY_PREFILTER NA Apr Day prefilter cDNA
WESTERNCHANNELOMM_SMPL_154-APR_NIGHT_PREFILTER NA Apr Night prefilter cDNA
WESTERNCHANNELOMM_SMPL_155-APR_DAY NA Apr Day cDNA
WESTERNCHANNELOMM_SMPL_156-AUG_4PM_PREFILTER NA Aug 4pm prefilter cDNA
WESTERNCHANNELOMM_SMPL_157-AUG_10PM_PREFILTER NA Aug 10pm refilter cDNA
WESTERNCHANNELOMM_SMPL_158-AUG_4AM_PREFILTER NA Aug 4am prefilter cDNA
WESTERNCHANNELOMM_SMPL_159-AUG_10AM_PREFILTER NA Aug 10am prefilter cDNA
WESTERNCHANNELOMM_SMPL_170_JAN_DAY_PF NA Jan Day prefilter 16S
WESTERNCHANNELOMM_SMPL_171_JAN_NIGHT_PF NA Jan Night prefilter 16S
WESTERNCHANNELOMM_SMPL_172_AUG_4PM_PF NA Aug 4pm prefilter 16S
WESTERNCHANNELOMM_SMPL_173_AUG_10PM_PF NA Aug 10pm refilter 16S
WESTERNCHANNELOMM_SMPL_174_AUG_4AM_PF NA Aug 4am prefilter 16S
WESTERNCHANNELOMM_SMPL_175_AUG_10AM_PF NA Aug 10am prefilter 16S
WESTERNCHANNELOMM_SMPL_176_APR_DAY_PF NA Apr Day prefilter 16S
WESTERNCHANNELOMM_SMPL_177_APR_NIGHT_PF NA Apr Night prefilter 16S
WESTERNCHANNELOMM_SMPL_178_JAN_DAY NA Jan Day 16S
WESTERNCHANNELOMM_SMPL_179_APR_DAY NA Apr Day 16S
WESTERNCHANNELOMM_SMPL_APR_DAY NA Apr Day gDNA
WESTERNCHANNELOMM_SMPL_APR_DAY_PF NA Apr Day prefilter gDNA
WESTERNCHANNELOMM_SMPL_APR_NIGHT_PF NA Apr Night prefilter gDNA
WESTERNCHANNELOMM_SMPL_AUG_10AM_PF NA Aug 10am prefilter gDNA
WESTERNCHANNELOMM_SMPL_AUG_10PM_PF NA Aug 10pm refilter gDNA
WESTERNCHANNELOMM_SMPL_AUG_4AM_PF NA Aug 4am prefilter gDNA
WESTERNCHANNELOMM_SMPL_AUG_4PM_PF NA Aug 4pm prefilter gDNA
WESTERNCHANNELOMM_SMPL_JAN_DAY NA Jan Day gDNA
WESTERNCHANNELOMM_SMPL_JAN_DAY_PF NA Jan Day prefilter gDNA
WESTERNCHANNELOMM_SMPL_JAN_NIGHT_PF NA Jan Night prefilter gDNA


Type Location
Meta  /iplant/home/shared/imicrobe/projects/72/CAM_PROJ_WesternChannelOMM.csv
Meta  /iplant/home/shared/imicrobe/projects/72/sample-attr.tab
Reads  /iplant/home/shared/imicrobe/projects/72/CAM_PROJ_WesternChannelOMM.read.fa
Reads  /iplant/home/shared/imicrobe/projects/72/samples/1300/WESTERNCHANNELOMM_SMPL_150-JAN_DAY.fa
Reads  /iplant/home/shared/imicrobe/projects/72/samples/1301/WESTERNCHANNELOMM_SMPL_151-JAN_DAY_PREFILTER.fa
Reads  /iplant/home/shared/imicrobe/projects/72/samples/1302/WESTERNCHANNELOMM_SMPL_152-JAN_NIGHT_PREFILTER.fa
Reads  /iplant/home/shared/imicrobe/projects/72/samples/1303/WESTERNCHANNELOMM_SMPL_153-APR_DAY_PREFILTER.fa
Reads  /iplant/home/shared/imicrobe/projects/72/samples/1304/WESTERNCHANNELOMM_SMPL_154-APR_NIGHT_PREFILTER.fa
Reads  /iplant/home/shared/imicrobe/projects/72/samples/1305/WESTERNCHANNELOMM_SMPL_155-APR_DAY.fa
Reads  /iplant/home/shared/imicrobe/projects/72/samples/1306/WESTERNCHANNELOMM_SMPL_156-AUG_4PM_PREFILTER.fa
Reads  /iplant/home/shared/imicrobe/projects/72/samples/1307/WESTERNCHANNELOMM_SMPL_157-AUG_10PM_PREFILTER.fa
Reads  /iplant/home/shared/imicrobe/projects/72/samples/1308/WESTERNCHANNELOMM_SMPL_158-AUG_4AM_PREFILTER.fa
Reads  /iplant/home/shared/imicrobe/projects/72/samples/1309/WESTERNCHANNELOMM_SMPL_159-AUG_10AM_PREFILTER.fa
Reads  /iplant/home/shared/imicrobe/projects/72/samples/1310/WESTERNCHANNELOMM_SMPL_170_JAN_DAY_PF.fa
Reads  /iplant/home/shared/imicrobe/projects/72/samples/1311/WESTERNCHANNELOMM_SMPL_171_JAN_NIGHT_PF.fa
Reads  /iplant/home/shared/imicrobe/projects/72/samples/1312/WESTERNCHANNELOMM_SMPL_172_AUG_4PM_PF.fa
Reads  /iplant/home/shared/imicrobe/projects/72/samples/1313/WESTERNCHANNELOMM_SMPL_173_AUG_10PM_PF.fa
Reads  /iplant/home/shared/imicrobe/projects/72/samples/1314/WESTERNCHANNELOMM_SMPL_174_AUG_4AM_PF.fa
Reads  /iplant/home/shared/imicrobe/projects/72/samples/1315/WESTERNCHANNELOMM_SMPL_175_AUG_10AM_PF.fa
Reads  /iplant/home/shared/imicrobe/projects/72/samples/1316/WESTERNCHANNELOMM_SMPL_176_APR_DAY_PF.fa
Reads  /iplant/home/shared/imicrobe/projects/72/samples/1317/WESTERNCHANNELOMM_SMPL_177_APR_NIGHT_PF.fa
Reads  /iplant/home/shared/imicrobe/projects/72/samples/1318/WESTERNCHANNELOMM_SMPL_178_JAN_DAY.fa
Reads  /iplant/home/shared/imicrobe/projects/72/samples/1319/WESTERNCHANNELOMM_SMPL_179_APR_DAY.fa
Reads  /iplant/home/shared/imicrobe/projects/72/samples/1320/WESTERNCHANNELOMM_SMPL_APR_DAY.fa
Reads  /iplant/home/shared/imicrobe/projects/72/samples/1321/WESTERNCHANNELOMM_SMPL_APR_DAY_PF.fa
Reads  /iplant/home/shared/imicrobe/projects/72/samples/1322/WESTERNCHANNELOMM_SMPL_APR_NIGHT_PF.fa
Reads  /iplant/home/shared/imicrobe/projects/72/samples/1323/WESTERNCHANNELOMM_SMPL_AUG_10AM_PF.fa
Reads  /iplant/home/shared/imicrobe/projects/72/samples/1324/WESTERNCHANNELOMM_SMPL_AUG_10PM_PF.fa
Reads  /iplant/home/shared/imicrobe/projects/72/samples/1325/WESTERNCHANNELOMM_SMPL_AUG_4AM_PF.fa
Reads  /iplant/home/shared/imicrobe/projects/72/samples/1326/WESTERNCHANNELOMM_SMPL_AUG_4PM_PF.fa
Reads  /iplant/home/shared/imicrobe/projects/72/samples/1327/WESTERNCHANNELOMM_SMPL_JAN_DAY.fa
Reads  /iplant/home/shared/imicrobe/projects/72/samples/1328/WESTERNCHANNELOMM_SMPL_JAN_DAY_PF.fa
Reads  /iplant/home/shared/imicrobe/projects/72/samples/1329/WESTERNCHANNELOMM_SMPL_JAN_NIGHT_PF.fa