Sample: MMETSP0946

Sample Name MMETSP0946 
Sample Type eukaryotes
Project Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)
Investigators (1)

Vaucheria litorea CCMP2940

Sample Accession CAM_SMPL_002656
Combined Assembly Vaucheria-litorea-CCMP2940
Taxon ID 109269

Ph 7.5  
Phosphate 0.0144  
Nitrate 0.352  
Iron 5.54  
Axenic No  
Trace elements 0.4377  
Experimental salinity 32  

Growth medium modified f/2 media  
Modifications to growth medium Final molar concentration of vitamins as follows: Thiamine - HCl =1.184E-07M; Biotin=1.60E-07M; Vitamin B12=2.95E-08M  

NCBI SRA SRS621312  

Habitat name marine habitat  
Habitat marine habitat  
Habitat description salt marsh  

Site name Atlantic_Ocean  
Country US  
Depth 0.1  
Sample collection site Atlantic_Ocean  

Project id 104  
Collection start time 2007-07-01 00:00:00.0  
Collection stop time 2007-07-01 00:00:00.0  
Clonal No  
Collection date 01-JUL-07  
Date of experiment 30-JUN-11  
External sample id Vlit_pooled  
Investigation type EU  
Principle investigator Mary Rumpho  
Primary citation Agardh, C.A. (1823). Species algarum rite congitae, com synonymis, differentiis specificis et descriptionibus succinctis. Volumen primum pars posterior.pp. [vii-viii],[300]-531. Luncae [Lund]: ex officina Berlingiana.  
Other experimental metadata available RNA will be pooled from algae grown under high, ambient and low light and collected from time points spanning the diurnal cycle.  

GenBank BioSample 2740257  
Fastq file /iplant/home/shared/imicrobe/projects/104/transcriptomes/MMETSP094/MMETSP0946.fastq.tar  

Experimental temperature 18  

Library acc CAM_LIB_001422  
Sequencing method Illumina  
Dna type cDNA  
Assembly accession number CAM_ASM_000474  
Combined assembly name Vaucheria-litorea-CCMP2940  
Pcr amp No  

Source mat id (MMETSP0946) Vaucheria litorea  
Source mat id 3131  
Source mat id CAM_BM_002676  
Source mat id CAM_SMPL_002656  
Sample type eukaryotes  
Sample description Vaucheria litorea CCMP2940  
Sample name MMETSP0946  
Taxon id 109269  

Strain CCMP2940  
Genus Vaucheria  
Species litorea  
Family Vaucheriaceae  
Order Vaucheriales  
Superkingdom Eukaryota  
Class Xanthophyceae  
Phylum Ochrophyta